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Cell Illustrator

張貼者:2010年9月19日 上午8:49未知的使用者   [ eddie liu 已於 2011年12月22日 上午1:43 更新 ]
Cell Illustrator 是一套方便的軟體工具讓生物學家繪製、建立模組、讓複雜的生物過程和系統容易理解。
 
 
 
 
 


 It has outstanding drawing capabilities, moreover it allows researchers to model metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various biological entities such as genomic DNA, mRNA and proteins.

Cell Illustrator models are used to visualize biological pathways, interpret experimental data and test hypotheses. In addition, it provides researchers with model diagrams of publication quality and simulation result charts.





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開發商:The University of Tokyo.
原廠網址:http://www.cellillustrator.com/key_features

更新日期:2011/05/11

採購正式版、大量授權報價、技術支援、軟體諮詢、委託採購、詢問報價請來電 02-29299388 分機16 ,

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主要特點

創建模型

從 Web瀏覽器輕鬆運行在所有通用平台,如Windows,Linux還是 Mac
直觀的用戶界面
SVG的圖書館生物分子
性質的所有模型元素表列,很容易修改
Asocciate與外部數據庫
可視化集成模式的分析基因關係網絡

導入模型

進口生物學標記語言 / CellML模型和BioPAX /民間社會組織本體
整個途徑或單一反應可以進口 TRANSPATH數據庫

模擬

五模擬模式:連續 3個不同的模擬方式,一步一步模擬和仿真動畫
變量的實際值可以顯示在模擬
離散過程具有獨特的動畫模擬選項來觀察流過系統的數量
模擬結果可以給出實時圖形或者導出為通用格式的文件
仿真運行可以被保存在一個日誌文件,並在重放播放器的Cell Illustrator
歷史對話的仿真提供了訪問以前版本的模型和仿真結果
最後的模擬結果可以用細胞呈現動畫與圖形和動畫。 樣品驗證生化模式創建的,可使用的Cell Illustrator
參數化仿真允許運行一個類似模擬一批通過改變一個或多個參數。 仿真結果可以比較的三維圖。
出口的仿真模型,源代碼。 此源代碼可以被定制,在編制和執行外部程序



Key Features

Creating Models

Easy run from web browser on all universal platforms, e.g. Windows, Linux, Mac
Intuitive User Interface
SVG Library of biological elements
Properties of all model elements are tabulated and are easy to modify
Asocciate with external Databases
Integrated visualization mode for the analysis of Gene Relationship Networks

Importing Models

Import of SBML/CellML models and BioPAX/CSO ontologies
Whole pathways or single reactions can be imported from TRANSPATH database

Simulation

Five simulation modes: three different continuous simulation modes, step simulation and step simulation with animation
Variables' actual values can be displayed during simulation
Discrete processes have unique animated simulation option to observe quantities flow through the system
Simulation results can be presented on real-time graphs or exported to common format files
A simulation run can be saved in a log file and replayed in Cell Illustrator Player
The Simulation History dialog provides access to previous versions of a model and simulation results
Final simulation results can be presented using Cell Animator with graphs and animations. Sample verified biochemical models created using Cell Illustrator are available
Parameterized Simulation allows to run a batch of similar simulation by varying one or more parameter. The simulation result can be compared on 3D charts.
Export the simulation model to source code. This source code can be customized, compiled and executed in an external application